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Within the facility, we have 2 powerful computers:
- The Image Processing Workstation (PC1) mainly for image analysis and processing.
- The Data Analysis PC (PC2) mainly for data analysis.
There are several image analysis packages in addition to the microscope manufacturer's own software:
| Software | PC1 | PC2 | |
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For 3D and 4D real-time interactive image visualization We now have the full version of IMARIS installed. |
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Hyugens software packages are intended for deconvolution, interactive analysis and volume visualization of 2D, 3D, multi-channel and time series images from fluorescence microscopes. We have the full Hyugens software: Hyugens Essential, Hyugens Professional, Hyugens Scripting, Hyugens Titan and Hyugens Core |
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MediaCybernetics AutoQuant Advanced image deconvolution software |
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Fiji is an image processing package. It can be described as a distribution of ImageJ (and ImageJ2) together with Java, Java3D and a lot of plugins organized into a coherent menu structure. The doumentation pages of the Fiji website also provide a lot of help on using the programme. A collection of Image J plugins can be found here. |
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Molecular Devices (MetaMorph Offline) A flexible and powerful tool for image acquisition, processing, and analysis. |
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A flexible and powerful tool for image acquisition, processing, and analysis for images acquired through SPE2 and SP8. |
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A flexible and powerful tool for image acquisition, processing, and analysis for images acquired through FV3000. |
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MATLAB combines a desktop environment tuned for iterative analysis and design processes with a programming language that expresses matrix and array mathematics directly. |
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GraphPad Prism is a software package where it is widely use to analyze, graph and present their scientific data. |
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QtiPlot is a cross platform data analysis and scientific visualisation solution. |
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Powerful graphics editor for handling image files |
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